SysQuan Mouse Database

Fast, large-scale absolute quantification for human samples. Unlike traditional methods requiring expensive synthetic peptides for each target, SysQuan uses metabolically K6-labeled mouse tissues with pre-quantified proteins. Simply mix your human samples with our standardized mouse tissue extracts to achieve absolute quantification across the entire proteome.

How to Use:

Search for proteins by gene name, UniProt accession, or peptide sequence
Filter by tissue type or assay availability (MRM, PRM-PASEF)
Select peptides to add them to your cart
Access MRM/PRM transitions, calibration curves, and observed peptide spectra
Download assay data

Available Data:

Optimized MRM & PRM-PASEF transitions for targeted MS
Absolute quantification calibration curves (fmol/µg)
Observed peptide MS/MS spectra from mouse tissues
Multi-tissue coverage across mouse organs

Use the SysQuan Kit: Pre-quantified K6-labeled mouse tissue extracts ready to spike into your human samples for rapid absolute quantification—no need for expensive synthetic peptide standards!

Uniprot ID	Gene	Peptide Sequence	Tissue	Mouse Conc. (fmol/µg)	Incorp. (%)	Assays Available	PTM
E9PVD2	Itih4	FKPTLSQQQK	kidney	—	100.0	MRM+PRM	—
E9PVD2	Itih4	FKPTLSQQQK	liver	—	100.0	MRM+PRM	—
E9PVD2	Itih4	FKPTLSQQQK	lung	—	100.0	MRM+PRM	—
E9PVD2	Itih4	FKPTLSQQQK	plasma	—	100.0	MRM+PRM	—
E9PVD2	Itih4	VRPQQLVK	Heart	—	100.0	MRM+PRM	—
E9PVD2	Itih4	VRPQQLVK	kidney	—	100.0	MRM+PRM	—
E9PVD2	Itih4	VRPQQLVK	lung	—	100.0	MRM+PRM	—
E9PVD2	Itih4	VRPQQLVK	plasma	—	100.0	MRM+PRM	—
E9PWQ3	Col6a3	LLVLITGGK	kidney	—	100.0	MRM+PRM	—
E9PWQ3	Col6a3	LLVLITGGK	SmallIntestines	—	100.0	MRM+PRM	—
E9PWQ3	Col6a3	LLVLITGGK	Spleen	—	100.0	MRM+PRM	—
E9PWQ3	Col6a3	LLVLITGGK	TailSkin	—	100.0	MRM+PRM	—
E9PX59	Samd9l	NSYISDTLGQVYK	lung	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	DFLVIPSPVLVK	BoneMarrow	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	DFLVIPSPVLVK	BrainStem	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	DFLVIPSPVLVK	Cerebellum	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	DFLVIPSPVLVK	Cerebrum	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	DFLVIPSPVLVK	Heart	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	DFLVIPSPVLVK	kidney	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	DFLVIPSPVLVK	liver	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	DFLVIPSPVLVK	lung	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	DFLVIPSPVLVK	SalivaryGland	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	DFLVIPSPVLVK	SmallIntestines	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	LDPGAVSDVPEAIK	Cerebellum	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	LDPGAVSDVPEAIK	Heart	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	LDPGAVSDVPEAIK	kidney	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	LDPGAVSDVPEAIK	liver	—	100.0	MRM+PRM	—
E9Q3L2	Pi4ka	LDPGAVSDVPEAIK	lung	—	100.0	MRM+PRM	—
E9Q3M3	Dctn1	DQLDETVNVEPLTK	BrainStem	—	100.0	MRM+PRM	—
E9Q3M3	Dctn1	DQLDETVNVEPLTK	Cerebellum	—	100.0	MRM+PRM	—
E9Q3M3	Dctn1	DQLDETVNVEPLTK	Cerebrum	—	100.0	MRM+PRM	—
E9Q414	Apob	LAIPEGK	SmallIntestines	—	100.0	MRM+PRM	—
E9Q414	Apob	QGFFPDSVNK	liver	—	100.0	MRM+PRM	—
E9Q456	Tpm1	SIDDLEDELYAQK	Cerebellum	—	100.0	MRM+PRM	—
E9Q4S7	Ptprj	FSGFEASHGPIK	kidney	—	100.0	MRM+PRM	—
E9Q4S7	Ptprj	FSGFEASHGPIK	liver	—	100.0	MRM+PRM	—
E9Q5F9	Setd2	NDEIIDATQK	lung	—	100.0	MRM+PRM	—
E9Q7Q3	Tpm3	TIDDLEDELYAQK	lung	—	100.0	MRM+PRM	—
E9Q800	Immt	AVDEAADALLK	Heart	—	100.0	MRM+PRM	—
E9QAE4	Nsd1	VGLFALSDIK	Cerebrum	—	100.0	MRM+PRM	—
E9QPU1	Vwf	HIVTFDGQNFK	plasma	—	100.0	MRM+PRM	—
F7ACR9	Macf1	ELEEAVTSALQQETEK	kidney	—	100.0	MRM+PRM	—
F7ACR9	Macf1	ELEEAVTSALQQETEK	liver	—	100.0	MRM+PRM	—
F7ACR9	Macf1	ELEEAVTSALQQETEK	Spleen	—	100.0	MRM+PRM	—
F7BJK1	Pcdh1	VTVLDTNDNAPK	BrainStem	—	100.0	MRM+PRM	—
F7BJK1	Pcdh1	VTVLDTNDNAPK	Cerebellum	—	100.0	MRM+PRM	—
F7BJK1	Pcdh1	VTVLDTNDNAPK	Cerebrum	—	100.0	MRM+PRM	—
F8VQJ3	Lamc1	VSVPLIAQGNSYPSETTVK	BoneMarrow	—	100.0	MRM+PRM	—
F8VQJ3	Lamc1	VSVPLIAQGNSYPSETTVK	BrainStem	—	100.0	MRM+PRM	—
F8VQJ3	Lamc1	VSVPLIAQGNSYPSETTVK	Cerebrum	—	100.0	MRM+PRM	—

SysQuan Mouse Database

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