Welcome to SysQuan Mouse
You're looking at the coverage statistics for the SysQuan mouse atlas: how many proteins we can quantify, which tissues they were measured in, and the targeted assays (MRM, PRM) available for each. Mix your mouse samples with our pre-quantified K6-labelled mouse reference proteome to get absolute quantification for your proteins of interest. Explore our database →
Quantifiable Proteins
16764
Targeted Assays
3266
Tissues Covered
19
Protein Coverage by Tissue
| Tissue | Total | Quantifiable |
|---|---|---|
| BoneMarrow single injection | 5478 | 4058 |
| Brain stem | 12163 | 10062 |
| Cerebellum | 11772 | 9629 |
| Cerebrum | 12427 | 10280 |
| Heart | 8666 | 6866 |
| Kidney | 10282 | 8507 |
| Liver | 10501 | 8726 |
| Lung | 12241 | 10315 |
| LymphNodes single injection | 5326 | 3832 |
| Muscle single injection | 3030 | 2218 |
| Pancreas single injection | 3304 | 2637 |
| Plasma | 1951 | 1247 |
| SalivaryGland single injection | 5093 | 3716 |
| SmallIntestines single injection | 5508 | 4150 |
| Spermatozoa single injection | 2885 | 2142 |
| Spleen single injection | 5156 | 3726 |
| Tail skin single injection | 2154 | 1507 |
| Thymus single injection | 4636 | 3190 |
| Thyroid single injection | 3449 | 2462 |
| Total Unique | 20056 | 16764 |
Tissues marked single injection were acquired without offline fractionation. All others were fractionated, which is why their protein counts are higher.
Phosphopeptides by Tissue
| Tissue | Total | Quantifiable |
|---|---|---|
| Brain stem | 4638 | 1872 |
| Cerebellum | 4795 | 1854 |
| Cerebrum | 5801 | 2338 |
| Liver | 2808 | 1159 |
| Total Unique | 10486 | 4133 |
Targeted Assays Available
| Tissue | MRM | PRM-PASEF | Total |
|---|---|---|---|
| BoneMarrow | 1562 | 355 | 1570 |
| Brain stem | 2730 | 596 | 2744 |
| Cerebellum | 2656 | 564 | 2666 |
| Cerebrum | 2690 | 573 | 2705 |
| Heart | 2497 | 542 | 2510 |
| Kidney | 2843 | 618 | 2858 |
| Liver | 2924 | 651 | 2938 |
| Lung | 2890 | 642 | 2903 |
| LymphNodes | 1652 | 357 | 1658 |
| Muscle | 1145 | 252 | 1149 |
| Pancreas | 1332 | 279 | 1338 |
| Plasma | 748 | 226 | 759 |
| SalivaryGland | 1678 | 362 | 1686 |
| SmallIntestines | 1743 | 381 | 1752 |
| Spermatozoa | 753 | 169 | 758 |
| Spleen | 1523 | 348 | 1529 |
| Tail skin | 868 | 209 | 873 |
| Thymus | 1487 | 321 | 1492 |
| Thyroid | 1311 | 284 | 1318 |
Tissue-Specific Peptide Entries
Proteins Shared Across Tissues
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