Welcome to SysQuan Mouse
You're looking at the coverage statistics for the SysQuan mouse atlas: how many proteins we can quantify, which tissues they were measured in, and the targeted assays (MRM, PRM) available for each. Mix your mouse samples with our pre-quantified K6-labelled mouse reference proteome to get absolute quantification for your proteins of interest. Explore our database →
Quantifiable Proteins
17064
Targeted Assays
3442
Tissues Covered
25
Protein Coverage by Tissue
| Tissue | Total | Quantifiable |
|---|---|---|
| AdrenalGland single injection | 5438 | 3811 |
| Bladder single injection | 5092 | 3594 |
| BoneMarrow single injection | 5478 | 4058 |
| Brain stem | 12163 | 10062 |
| Cerebellum | 11772 | 9629 |
| Cerebrum | 12427 | 10280 |
| Gallbladder single injection | 4508 | 3144 |
| Heart | 8666 | 6866 |
| Kidney | 10282 | 8507 |
| LargeIntestines single injection | 4438 | 3264 |
| Liver | 10582 | 8758 |
| Lung | 12241 | 10315 |
| LymphNodes single injection | 5326 | 3832 |
| Muscle | 7941 | 6327 |
| Pancreas single injection | 3304 | 2637 |
| Plasma | 1951 | 1247 |
| SalivaryGland single injection | 5093 | 3716 |
| SciaticNerve single injection | 3861 | 2754 |
| SmallIntestines single injection | 5508 | 4150 |
| Spermatozoa single injection | 2885 | 2142 |
| Spleen single injection | 5156 | 3726 |
| Tail skin single injection | 2154 | 1507 |
| Thymus single injection | 4636 | 3190 |
| Thyroid single injection | 3449 | 2462 |
| Trachea single injection | 4732 | 3299 |
| Total Unique | 20460 | 17064 |
Tissues marked single injection were acquired without offline fractionation. All others were fractionated, which is why their protein counts are higher.
Phosphopeptides by Tissue
| Tissue | Total | Quantifiable |
|---|---|---|
| Brain stem | 4638 | 1872 |
| Cerebellum | 4795 | 1854 |
| Cerebrum | 5801 | 2338 |
| Liver | 2808 | 1159 |
| Total Unique | 10486 | 4133 |
Targeted Assays Available
| Tissue | MRM | PRM-PASEF | Total |
|---|---|---|---|
| AdrenalGland | 1758 | 1016 | 1766 |
| Bladder | 1636 | 984 | 1645 |
| BoneMarrow | 1614 | 960 | 1622 |
| Brain stem | 2883 | 1473 | 2896 |
| Cerebellum | 2802 | 1420 | 2811 |
| Cerebrum | 2843 | 1437 | 2857 |
| Gallbladder | 1697 | 1018 | 1704 |
| Heart | 2630 | 1367 | 2642 |
| Kidney | 2997 | 1520 | 3011 |
| LargeIntestines | 1488 | 891 | 1496 |
| Liver | 3082 | 1571 | 3095 |
| Lung | 3052 | 1572 | 3064 |
| LymphNodes | 1707 | 1009 | 1712 |
| Muscle | 2492 | 1342 | 2502 |
| Pancreas | 1363 | 810 | 1368 |
| Plasma | 752 | 512 | 762 |
| SalivaryGland | 1729 | 1011 | 1736 |
| SciaticNerve | 1430 | 904 | 1436 |
| SmallIntestines | 1794 | 1039 | 1802 |
| Spermatozoa | 767 | 466 | 772 |
| Spleen | 1573 | 940 | 1579 |
| Tail skin | 880 | 598 | 885 |
| Thymus | 1532 | 907 | 1537 |
| Thyroid | 1335 | 841 | 1342 |
| Trachea | 1515 | 929 | 1522 |
Tissue-Specific Peptide Entries
Proteins Shared Across Tissues
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